Monthly Archives: August 2017

  • 0

knox is not getting start, failing with error Gateway SSL Certificate is Expired

When you try to start knox then if it fails with following error then don’t worry, this article will help you to solve problem.

INFO hadoop.gateway (JettySSLService.java: logAndValidateCertificate(122)) – The Gateway SSL certificate is valid between:  FATAL hadoop.gateway (GatewayServer.java:main (120)) – Failed to start gateway: org.apache.hadoop.gateway.services. ServiceLifecycleException: Gateway SSL Certificate is Expired.

 

Root cause: It is because of your gateway.jks file corrupted.

Resolution: So to solve this issue you need to follow given steps:

  • On the knox gateway locate the gateway.jks file — it is usually in the path /var/lib/knox/data*/security/keystores/gateway.jks

[knox@m1.hdp22 ~]$ ls -ltrh /var/lib/knox/data-2.6.1.0-129/security/keystores/*
-rw-r--r-- 1 knox knox 32 Aug 28 05:42 /var/lib/knox/data-2.6.1.0-129/security/keystores/__gateway-credentials.jceks
-rw-r--r-- 1 knox knox 1.4K Aug 28 05:42 /var/lib/knox/data-2.6.1.0-129/security/keystores/gateway.jks
-rw-r--r-- 1 knox knox 511 Aug 28 08:53 /var/lib/knox/data-2.6.1.0-129/security/keystores/default-credentials.jceks

  • Move the original file gateway.jks to another directory as a backup copy
  • Restart the knox server

  • 0

Hive metastore critical alerts with ExecutionFailed: Execution of ‘export HIVE_CONF_DIR=’/usr/hdp/current/hive-metastore/conf

When you install Atlas and configure it then you may see following alert in Ambari Hive Service.

And once you check this alert details, you will see following error :

Metastore on m1.hdp22 failed (Traceback (most recent call last):
File “/var/lib/ambari-agent/cache/common-services/HIVE/0.12.0.2.0/package/alerts/alert_hive_metastore.py”, line 200, in execute
timeout_kill_strategy=TerminateStrategy.KILL_PROCESS_TREE,
File “/usr/lib/python2.6/site-packages/resource_management/core/base.py”, line 155, in __init__
self.env.run()
File “/usr/lib/python2.6/site-packages/resource_management/core/environment.py”, line 160, in run
self.run_action(resource, action)
File “/usr/lib/python2.6/site-packages/resource_management/core/environment.py”, line 124, in run_action
provider_action()
File “/usr/lib/python2.6/site-packages/resource_management/core/providers/system.py”, line 262, in action_run
tries=self.resource.tries, try_sleep=self.resource.try_sleep)
File “/usr/lib/python2.6/site-packages/resource_management/core/shell.py”, line 72, in inner
result = function(command, **kwargs)
File “/usr/lib/python2.6/site-packages/resource_management/core/shell.py”, line 102, in checked_call
tries=tries, try_sleep=try_sleep, timeout_kill_strategy=timeout_kill_strategy)
File “/usr/lib/python2.6/site-packages/resource_management/core/shell.py”, line 150, in _call_wrapper
result = _call(command, **kwargs_copy)
File “/usr/lib/python2.6/site-packages/resource_management/core/shell.py”, line 303, in _call
raise ExecutionFailed(err_msg, code, out, err)
ExecutionFailed: Execution of ‘export HIVE_CONF_DIR=’/usr/hdp/current/hive-metastore/conf’ ; hive –hiveconf hive.metastore.uris=thrift://m1.hdp22:9083 –hiveconf hive.metastore.client.connect.retry.delay=1 –hiveconf hive.metastore.failure.retries=1 –hiveconf hive.metastore.connect.retries=1 –hiveconf hive.metastore.client.socket.timeout=14 –hiveconf hive.execution.engine=mr -e ‘show databases;” returned 1. log4j:WARN No such property [maxFileSize] in org.apache.log4j.DailyRollingFileAppender.
Logging initialized using configuration in file:/etc/hive/2.6.1.0-129/0/hive-log4j.properties
Exception in thread “main” java.lang.ExceptionInInitializerError
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.apache.atlas.hive.hook.HiveHook.initialize(HiveHook.java:71)
at org.apache.atlas.hive.hook.HiveHook.<init>(HiveHook.java:41)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at org.apache.hadoop.hive.ql.hooks.HookUtils.getHooks(HookUtils.java:60)
at org.apache.hadoop.hive.ql.Driver.getHooks(Driver.java:1386)
at org.apache.hadoop.hive.ql.Driver.getHooks(Driver.java:1370)
at org.apache.hadoop.hive.ql.Driver.execute(Driver.java:1598)
at org.apache.hadoop.hive.ql.Driver.runInternal(Driver.java:1291)
at org.apache.hadoop.hive.ql.Driver.run(Driver.java:1158)
at org.apache.hadoop.hive.ql.Driver.run(Driver.java:1148)
at org.apache.hadoop.hive.cli.CliDriver.processLocalCmd(CliDriver.java:217)
at org.apache.hadoop.hive.cli.CliDriver.processCmd(CliDriver.java:169)
at org.apache.hadoop.hive.cli.CliDriver.processLine(CliDriver.java:380)
at org.apache.hadoop.hive.cli.CliDriver.processLine(CliDriver.java:315)
at org.apache.hadoop.hive.cli.CliDriver.executeDriver(CliDriver.java:712)
at org.apache.hadoop.hive.cli.CliDriver.run(CliDriver.java:685)
at org.apache.hadoop.hive.cli.CliDriver.main(CliDriver.java:625)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.util.RunJar.run(RunJar.java:233)
at org.apache.hadoop.util.RunJar.main(RunJar.java:148)
Caused by: java.lang.NullPointerException
at org.apache.atlas.hook.AtlasHook.<clinit>(AtlasHook.java:74)
… 29 more
)

Root Cause: This happens when you have installed Atlas on that server where you do not have hive client. Actually you have org.apache.atlas.hive.hook.HiveHook in hive.exec.post.hooks hive property.

Solution :  So to get rid of this alert we need to either remove this parameters from property but as we are using Atlas so we can’t delete it then another option is installed hive client on the same server where you have atlas server.

 

Please feel free to give your valuable feedback to improve articles.


  • 0

Sqoop import is failing after enabling atlas with ERROR security.InMemoryJAASConfiguration: Unable to add JAAS configuration

When you run Sqoop import with teradata or mysql/oracle then it might fail after installing and enabling atlas in your cluster with following error.
17/08/10 04:31:56 ERROR security.InMemoryJAASConfiguration: Unable to add JAAS configuration for client [KafkaClient] as it is missing param [atlas.jaas.KafkaClient.loginModuleName]. Skipping JAAS config for [KafkaClient]
17/08/10 04:31:58 INFO checking on the exit code
17/08/10 04:31:58 ERROR:Error with sqoop command :17/08/10 04:31:56 ERROR security.InMemoryJAASConfiguration: Unable to add JAAS configuration for client [KafkaClient] as it is missing param [atlas.jaas.KafkaClient.loginModuleName]. Skipping JAAS config for [KafkaClient]

Root Cause:

This issue is caused by authentication problems in atlas in case you have not enabled kerberos. Following parameters are set true causing the problem,You can check these parameters in /etc/sqoop/2.6.1.0-129/0/atlas-application.properties
atlas.jaas.KafkaClient.option.renewTicket=true
atlas.jaas.KafkaClient.option.useTicketCache=true

[s0998dnz@m1.hdp22 ~]$ cat /etc/sqoop/2.6.1.0-129/0/atlas-application.properties
# Generated by Apache Ambari. Tue Aug 22 06:00:47 2017

atlas.authentication.method.kerberos=False
atlas.cluster.name=HDPPROD
atlas.jaas.KafkaClient.option.renewTicket=true
atlas.jaas.KafkaClient.option.useTicketCache=true
atlas.kafka.bootstrap.servers=m2.hdp22:6667
atlas.kafka.hook.group.id=atlas
atlas.kafka.security.protocol=PLAINTEXT
atlas.kafka.zookeeper.connect=m1.hdp22:2181,m2.hdp22:2181,m3.hdp22:2181
atlas.kafka.zookeeper.connection.timeout.ms=30000
atlas.kafka.zookeeper.session.timeout.ms=60000
atlas.kafka.zookeeper.sync.time.ms=20
atlas.notification.create.topics=True
atlas.notification.replicas=1
atlas.notification.topics=ATLAS_HOOK,ATLAS_ENTITIES
atlas.rest.address=http://m1.hdp22:21000

Solution : If you do not have kerberos enabled in your cluster then you need to set them false or sometime setting them false does not work then you have to delete these properties from ambari with following method. 

Option 1. you manually need to edit the atlas-application.properties file and change the above mentioned properties to false.

atlas.jaas.KafkaClient.option.renewTicket=false
atlas.jaas.KafkaClient.option.useTicketCache=false

But if still it is failing then you need to remove these properties from ambari like below:

Option 2: Login to ambari server and remove both parameters by running the below commands 

/var/lib/ambari-server/resources/scripts/configs.sh -u admin -p admin delete localhost <Your cluster Name> sqoop-atlas-application.properties atlas.jaas.KafkaClient.option.renewTicket 

/var/lib/ambari-server/resources/scripts/configs.sh -u admin -p admin delete localhost <Your cluster Name> sqoop-atlas-application.properties atlas.jaas.KafkaClient.option.useTicketCache

  • 0

/usr/hdp/2.6.1.0-129/atlas/hook-bin/import-hive.sh is failing with Exception in thread “main” java.lang.NoClassDefFoundError: org/apache/hadoop/hbase/util/Bytes

When you have installed atlas on top of your cluster and you want to sync your hive data to atlas via following method then you may see following error after sometime(~20-30 mins) running your command.

[hive@m1.hdp22 ~]$ export HADOOP_CLASSPATH=`hadoop classpath`
[hive@m1.hdp22 ~]$ export HIVE_CONF_DIR=/etc/hive/conf
[hive@m1.hdp22 ~]$ /usr/hdp/2.6.1.0-129/atlas/hook-bin/import-hive.sh
Using Hive configuration directory [/etc/hive/conf]
Log file for import is /usr/hdp/2.6.1.0-129/atlas/logs/import-hive.log
Enter username for atlas :- saurkuma
Enter password for atlas :-

Exception in thread “main” java.lang.NoClassDefFoundError: org/apache/hadoop/hbase/util/Bytes
at org.apache.hadoop.hive.hbase.HBaseSerDe.parseColumnsMapping(HBaseSerDe.java:184)
at org.apache.hadoop.hive.hbase.HBaseSerDeParameters.<init>(HBaseSerDeParameters.java:73)
at org.apache.hadoop.hive.hbase.HBaseSerDe.initialize(HBaseSerDe.java:117)
at org.apache.hadoop.hive.serde2.AbstractSerDe.initialize(AbstractSerDe.java:54)
at org.apache.hadoop.hive.serde2.SerDeUtils.initializeSerDe(SerDeUtils.java:521)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.getDeserializer(MetaStoreUtils.java:410)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.getDeserializer(MetaStoreUtils.java:397)
at org.apache.hadoop.hive.ql.metadata.Table.getDeserializerFromMetaStore(Table.java:278)
at org.apache.hadoop.hive.ql.metadata.Table.getDeserializer(Table.java:260)
at org.apache.hadoop.hive.ql.metadata.Table.getColsInternal(Table.java:630)
at org.apache.hadoop.hive.ql.metadata.Table.getCols(Table.java:613)
at org.apache.atlas.hive.bridge.HiveMetaStoreBridge.createOrUpdateTableInstance(HiveMetaStoreBridge.java:488)
at org.apache.atlas.hive.bridge.HiveMetaStoreBridge.createTableInstance(HiveMetaStoreBridge.java:424)
at org.apache.atlas.hive.bridge.HiveMetaStoreBridge.registerTable(HiveMetaStoreBridge.java:505)
at org.apache.atlas.hive.bridge.HiveMetaStoreBridge.importTable(HiveMetaStoreBridge.java:289)
at org.apache.atlas.hive.bridge.HiveMetaStoreBridge.importTables(HiveMetaStoreBridge.java:272)
at org.apache.atlas.hive.bridge.HiveMetaStoreBridge.importDatabases(HiveMetaStoreBridge.java:143)
at org.apache.atlas.hive.bridge.HiveMetaStoreBridge.importHiveMetadata(HiveMetaStoreBridge.java:134)
at org.apache.atlas.hive.bridge.HiveMetaStoreBridge.main(HiveMetaStoreBridge.java:647)
Caused by: java.lang.ClassNotFoundException: org.apache.hadoop.hbase.util.Bytes
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
… 19 more
Failed to import Hive Data Model!!!

 

Root Cause : This issue seems to be a bug . So, you need to apply hot fix on hive side. 

Resolution : To apply hot fix you can can download attached jar file ( hive-metastore-1.2.1000.2.6.1.0-129.jar) from given URl for this issue, please follow below steps to replace the jar.

https://github.com/hadoopBrogrammers/hadoop-commander/blob/master/hive-metastore-1.2.1000.2.6.1.0-129.jar

Steps to apply this hot fix:
1. Back up the hive-metastore jar from /usr/hdp/2.6.1.0-129/hive/lib to some place on hiveserver 2 and hive-metastor servers.
2. Download and copy the jar at same location .
3. restart hive-metastore,hive-server2.

 

Please feel free to give your valuable feedback or suggestion to improve article.


  • 0

Spark job run successfully in client mode but failing in cluster mode

If you build a pyspark application which can run successfully  in both the local and yarn-client modes.  However, when you try to run in cluster mode, then you may receive following errors :

  1. Error 1:  Exception: (“You must build Spark with Hive. Export ‘SPARK_HIVE=true’ and run build/sbt assembly”, Py4JJavaError(u’An error occurred while calling None.org.apache.spark.sql.hive.HiveContext.\n’, JavaObject id=o52))
  2. Error 2: INFO Client: Deleting staging directory .sparkStaging/application_1476997468030_139760
    Exception in thread “main” org.apache.spark.SparkException: Application application_1476997468030_139760 finished at org.apache.spark.deploy.yarn.Client.run(Client.scala:974)
  3. Error 3: ERROR yarn.ApplicationMaster: User class threw exception: java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
    java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient Caused by: java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory
  4. Error 4: INFO ApplicationMaster: Final app status: FAILED, exitCode: 1, (reason: User application exited with status 1)
    17/08/22 04:56:19 ERROR ApplicationMaster: Uncaught exception:
    org.apache.spark.SparkException: Exception thrown in awaitResult:
    at org.apache.spark.util.ThreadUtils$.awaitResult(ThreadUtils.scala:194)
    at org.apache.spark.deploy.yarn.ApplicationMaster.runDriver(ApplicationMaster.scala:401)
    at org.apache.spark.deploy.yarn.ApplicationMaster.run(ApplicationMaster.scala:254)
    at org.apache.spark.deploy.yarn.ApplicationMaster$$anonfun$main$1.apply$mcV$sp(ApplicationMaster.scala:766)
    at org.apache.spark.deploy.SparkHadoopUtil$$anon$1.run(SparkHadoopUtil.scala:67)
    at org.apache.spark.deploy.SparkHadoopUtil$$anon$1.run(SparkHadoopUtil.scala:66)
    at java.security.AccessController.doPrivileged(Native Method)
    at javax.security.auth.Subject.doAs(Subject.java:422)
    at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1866)
    at org.apache.spark.deploy.SparkHadoopUtil.runAsSparkUser(SparkHadoopUtil.scala:66)
    at org.apache.spark.deploy.yarn.ApplicationMaster$.main(ApplicationMaster.scala:764)
    at org.apache.spark.deploy.yarn.ApplicationMaster.main(ApplicationMaster.scala)
    Caused by: org.apache.spark.SparkUserAppException: User application exited with 1

Root Cause : If you are using HDP stack then you might be hitting a bug with HDP 2.3.2 with Ambari 2.2.1 :https://hortonworks.jira.com/browse/BUG-56393 where starting from Ambari 2.2.1 , it does not manage the spark version if HDP stack is < HDP 2.3.4.

If not then you are missing some drivers and hive parameters which you need to pass in command line during spark-submit in cluster mode.

Resolution : You can use following steps to solve this issue :

  • Check the hive-site.xml contents. Should be like as below for spark.
  • Add hive-site.xml to the driver-classpath so that spark can read hive configuration. Make sure —files must come before you .jar file.
  • Add the datanucleus jars using –jars option when you submit
  • Check the contents of hive-site.xml
    <configuration>
    <property>
    <name>hive.metastore.uris</name>
    <value>thrift://sandbox.hortonworks.com:9083</value>
    </property>
    </configuration>
  • The Seq. of command
    spark-submit \
    –class <Your.class.name> \
    –master yarn-cluster \
    –num-executors 1 \
    –driver-memory 1g \
    –executor-memory 1g \
    –executor-cores 1 \
    –files /usr/hdp/current/spark-client/conf/hive-site.xml \
    –jars /usr/hdp/current/spark-client/lib/datanucleus-api-jdo-3.2.6.jar,/usr/hdp/current/spark-client/lib/datanucleus-rdbms-3.2.9.jar,/usr/hdp/current/spark-client/lib/datanucleus-core-3.2.10.jar \
    target/YOUR_JAR-1.0.0-SNAPSHOT.jar “show tables”

Or complete command can be :

spark-submit --master yarn --deploy-mode cluster --queue di --jars /usr/hdp/current/spark-client/lib/datanucleus-rdbms-3.2.9.jar,/usr/hdp/current/spark-client/lib/datanucleus-core-3.2.10.jar,/usr/hdp/current/spark-client/lib/datanucleus-api-jdo-3.2.6.jar --conf "spark.yarn.appMasterEnv.PATH=/opt/rh/rh-python34/root/usr/bin${PATH:+:${PATH}}" --conf "spark.yarn.appMasterEnv.PATH=/opt/rh/rh-python34/root/usr/bin${PATH:+:${PATH}}" --conf "spark.yarn.appMasterEnv.LD_LIBRARY_PATH=/opt/rh/rh-python34/root/usr/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}" --conf "spark.yarn.appMasterEnv.MANPATH=/opt/rh/rh-python34/root/usr/share/man:${MANPATH}" --conf "spark.yarn.appMasterEnv.XDG_DATA_DIRS=/opt/rh/rh-python34/root/usr/share${XDG_DATA_DIRS:+:${XDG_DATA_DIRS}}" --conf "spark.yarn.appMasterEnv.PKG_CONFIG_PATH=/opt/rh/rh-python34/root/usr/lib64/pkgconfig${PKG_CONFIG_PATH:+:${PKG_CONFIG_PATH}}" --conf "spark.executorEnv.PATH=/opt/rh/rh-python34/root/usr/bin${PATH:+:${PATH}}" --conf "spark.executorEnv.PATH=/opt/rh/rh-python34/root/usr/bin${PATH:+:${PATH}}" --conf "spark.executorEnv.LD_LIBRARY_PATH=/opt/rh/rh-python34/root/usr/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}" --conf "spark.executorEnv.MANPATH=/opt/rh/rh-python34/root/usr/share/man:${MANPATH}" --conf "spark.executorEnv.XDG_DATA_DIRS=/opt/rh/rh-python34/root/usr/share${XDG_DATA_DIRS:+:${XDG_DATA_DIRS}}" --conf "spark.executorEnv.PKG_CONFIG_PATH=/opt/rh/rh-python34/root/usr/lib64/pkgconfig${PKG_CONFIG_PATH:+:${PKG_CONFIG_PATH}}" hive.py

where hive.py has following value :

[adebatch@server1 ~]$ cat hive.py 
from pyspark import SparkContext,SparkConf
from pyspark.sql import HiveContext
import json
import sys
conf = SparkConf()
sc = SparkContext(conf=conf)
hiveCtx = HiveContext(sc)
result = hiveCtx.sql('show databases')
#result = hiveCtx.sql('select * from default.table1 limit 1')
result.show()
result.write.save('/tmp/pyspark', format='text', mode='overwrite')

Please feel free to give your valuable feedback.